PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0870s0230.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 993aa    MW: 110671 Da    PI: 6.9264
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0870s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.6e-2323124199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  SapurV1A.0870s0230.1.p  23 FCKILTASDTSTHGGFSVPRRAAEKTfppldfSMQPPA-QELVARDLHDNVWNFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVL 108
                             99*********************999*****9445444.38********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F+  ++++++l+++++r+
  SapurV1A.0870s0230.1.p 109 FM--RDEKQQLLLGIRRA 124
                             **..5688889****997 PP

2Auxin_resp119.23.3e-39149232183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+L+
  SapurV1A.0870s0230.1.p 149 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKNSQWRNLQ 232
                             79********************************9989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-4312152IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-4114137IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-1822114No hitNo description
SMARTSM010192.8E-2223125IPR003340B3 DNA binding domain
PROSITE profilePS5086312.29423125IPR003340B3 DNA binding domain
PfamPF023626.4E-2123124IPR003340B3 DNA binding domain
PfamPF065071.0E-34149232IPR010525Auxin response factor
PfamPF023099.1E-8877965IPR033389AUX/IAA domain
PROSITE profilePS5174527.966880964IPR000270PB1 domain
SuperFamilySSF542774.9E-7893958No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 993 aa     Download sequence    Send to blast
FDKDALLRSD LALKSNKPQT EFFCKILTAS DTSTHGGFSV PRRAAEKTFP PLDFSMQPPA  60
QELVARDLHD NVWNFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDSVLFM RDEKQQLLLG  120
IRRASRQPTN LSSSVLSTDS MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPLAKYY  180
KAVYSNQISL GMRFRMMFET EESGTRRYMG TITGISDLDS VRWKNSQWRN LQVGWDESTA  240
GERRNRVSIW EIEPVTAPFF ICPPPFFRSK RPRQPGMPDD DSSDLDSLFK RTMPWLGDDI  300
CMKDPQVLPG LSLAQRMNMQ QNPSLANTMQ PNYMQSLSGS VLQNLPGGDL SRQLGLSSPQ  360
MPQSNNLQFN AQRLPQQAQQ LDQLPKLQSS LGSIIQSQQQ MGDITQQSRQ NMMAQTLPSS  420
QVQAQLLQPQ TLAQTNNILQ QQPSIQSHQL LRNLPQTLHQ QQQNQQQHIM GQNQQQSLMQ  480
SQLSDQVNQH MQMSDNQIQS QLMQKLQQQQ QSVLSQQSVM QQAGQLGQLQ DSQRQLMDAS  540
QSLSRSMTPG QMLEIPQTTS TSLPQPNTIP QQMTKNNNQT NTRFAHPPQQ LKPQQQHPML  600
LSEMAGHMGL PPSAMTNQLS TAGPGQSGIT DDVPSCSTSP STNNYPNIVQ PMISGWAHRS  660
TAMGEDMAQS SSTLLSPSAL ETVSSNGNLI KDLLQKSEVK PSLNISKNHN PGSFASQTYL  720
NGVAAQTDYL DTSSSTTSVC LSQNDIHLQQ NNNSLSYNPQ TVLLRDTSQD CELQADPRNN  780
ILYGANIDSQ LVMPMNSDHL LTKGMVGLGK DFSNNLSSVG MLASCENSKD PQHELSSPIV  840
SKSFGVLDMQ FNSIDSTIND SNLLNRSSWA PPQQQFQRMR TYTKVYKRGA VGRSIDITRY  900
SGYDELKQDL ARRFGIEGQL EDQQRIGWKL VYTDHENDVL LVGDDPWEEF VNCVRCIKIL  960
SPQEVQQMSL DGDFGSSVLP NQAGSSSDNV NA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1212253136388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372205.10.0auxin response factor 2 family protein
TrEMBLB9N8470.0B9N847_POPTR; Auxin response factor
STRINGPOPTR_0018s14300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-165auxin response factor 19